The 13-year-old child was shot in the chest in the Dheisheh refugee camp in the southern West Bank and died of his wounds.
The Palestinian Health Ministry has yet to identify the victim.
The clashes broke out after occupier Israeli forces raided the refugee camp to arrest Palestinians.
Since March, more than 140 Palestinians have been martyred – and thousands more injured – in Palestinian protests in the Gaza Strip against the decades-long Israeli occupation and an 11-year blockade, which has gutted the Gaza economy and deprived its roughly 2 million inhabitants of many basic commodities.